Building on Ubuntu
This build was performed on a Virtual Box instance running a clean install of Ubuntu Linux 16.04 (LTS). Exactly the same process was also followed for a clean install of Linux Mint 15 on a Virtual Box.
Most of the prerequisite software was installed using Ubuntu packages. Boost was installed like this
sudo apt-get install libboost-all-dev
This installed a C++ compiler and OpenMPI compiler wrappers, as well as all of Boost. Other available packages were installed using
sudo apt-get install openmpi-bin make cmake git gfortran liblapack-dev doxygen
The doxygen
package can be skipped, since it installs a large number of dependencies. A compatible ParMETIS package is available, so install that
sudo apt-get install libparmetis-dev
PETSc
Ubuntu packages for PETSc 3.6 were available. These can be installed with
sudo apt-get petsc3.6-dev petsc-complex-3.6-dev
These are built with several optional packages, including Hypre, SuiteSparse, and MUMPS. SuperLU is also include, not SuperLU_DIST, which will limit direct linear solver methods in parallel. Alternatively, PETSc can be built from source.
PETSc version 3.4.3 was configured and built as follows:
prefix="$HOME/stuff" PETSC_DIR="$prefix/petsc-3.4.3" export PETSC_DIR python ./config/configure.py \ PETSC_ARCH=arch-linux2-complex-opt \ --with-prefix="$prefix" \ --with-mpi=1 \ --with-cc=mpicc \ --with-fc=mpif90 \ --with-cxx=mpicxx \ --with-c++-support=1 \ --with-c-support=0 \ --with-fortran=0 \ --with-pthread=0 \ --with-scalar-type=complex \ --with-fortran-kernels=generic \ --download-superlu_dist \ --download-parmetis \ --download-metis \ --with-clanguage=c++ \ --with-shared-libraries=0 \ --with-dynamic-loading=0 \ --with-x=0 \ --with-mpirun=mpirun \ --with-mpiexec=mpiexec \ --with-debugging=0 make PETSC_DIR="$prefix/petsc-3.4.3" PETSC_ARCH=arch-linux2-complex-opt all make PETSC_DIR="$prefix/petsc-3.4.3" PETSC_ARCH=arch-linux2-complex-opt test
ParMETIS was included in the build, so separate compilation was not necessary.
Global Arrays
Global Arrays version 5.2 was configured, built, and installed as follows:
prefix="$HOME/stuff" ./configure \ --enable-cxx \ --enable-i4 \ --disable-f77 \ --with-mpi \ --prefix="$prefix" \ --with-blas=no \ --with-lapack=no \ --enable-shared=no \ --enable-static=yes \ MPICC=mpicc MPICXX=mpicxx MPIF77=mpif90 \ MPIEXEC=mpiexec MPIRUN=mpirun make make install
Building and Testing GridPACK
GridPACK was configured and built as follows:
rm -f CMakeCache.txt prefix="$HOME/stuff" cmake -Wno-dev --debug-try-compile \ -D PETSC_DIR:STRING="$prefix/petsc-3.4.3" \ -D PETSC_ARCH:STRING="arch-linux2-complex-opt" \ -D GA_DIR:STRING="$prefix" \ -D MPI_CXX_COMPILER:STRING="mpicxx" \ -D MPI_C_COMPILER:STRING="mpicc" \ -D MPIEXEC:STRING="mpiexec" \ -D CMAKE_BUILD_TYPE:STRING="Debug" \ -D CMAKE_VERBOSE_MAKEFILE:BOOL=TRUE \ .. make make test